Questions tagged [numpy]
NumPy is the fundamental package for scientific computing with the programming language Python.
680
questions
3
votes
1answer
31 views
Dynamically indexing numpy array
I want to create a function that takes a numpy array, an axis and an index of that axis and returns the array with the index on the specified axis fixed. What I thought is to create a string that ...
0
votes
0answers
39 views
Vectorized code to find the position and length of runs of 1s in a bit matrix
I'm trying to write something like an adjusted run-length encoding for row-wise bit matrices. Specifically I want to "collapse" runs of 1s into the number of 1s in that run while maintaining ...
2
votes
0answers
24 views
Vectorizing a working custom similarity function further using numpy
I am new to python, and even more new to vectorization. I have attempted to vectorize a custom similarity function that should return a matrix of pairwise similarities between each row in an input ...
2
votes
0answers
16 views
Applying Minimum Image Convention in Python
I am computing pairwise Euclidean distances for 3-D vectors representing particle positions in a periodic system. The minimum image convention is applied for each periodic boundary such that a ...
3
votes
0answers
38 views
Nearest neighbor search algorithm of quantization
I'm doing some research on Nearest Neighbor Search of quantization, where running speed is very important. As I've just started using Python, I wonder if the following code for multi-processes can be ...
0
votes
1answer
29 views
Slow calculating sum of individual cells of matrix
I have a 3-D array in numpy, of dimensions 3000 x 2000 x 8
I need to modify the cells of the array so that each cell will contain the sum of all cells above and left of it, inclusive the current cell.
...
2
votes
0answers
24 views
Convolution layer using numpy in python
I'm trying to make a CNN in python using numpy. I have a finished product but it seems that it can be improved. On testing the convolutional layer is the biggest bottleneck
...
2
votes
1answer
59 views
Efficient Comparison Of Two Images Using Numpy
I want to compare 2 images using numpy. This is what I have got so far.
One of the outputs should be a white image with black pixels where pixels are different.
I ...
4
votes
0answers
48 views
How to structure and write exchangable calculation models (in python3 modules)?
I do research and compare different numeric models to each other. Therefore, I want to easily switch out the numeric models in my simulations and evaluation code.
Some models work in cartesian ...
7
votes
1answer
311 views
Genetic algorithm to guess coefficient of a polynomial
I have tried to code a genetic algorithm to guess the coefficients of a degree 4 polynomial. The information initially provided is values of y = f(x) for different x using the original polynomial. I ...
1
vote
0answers
87 views
Computing the angle between two vectors (vectorized) for small angles and with few copies
I am implementing a function that computes the angle between two vectors when given two n-dimensional arrays and an axis along which to operate. I want to do this with as few copies as possible, and ...
4
votes
1answer
80 views
Dataframe transformation to numpy ndarray takes ages to complete
I would like to transform my dataframe into an array of fixed-sized chunks from each unique segment. Specifically, I would like to transform the ...
0
votes
1answer
30 views
Get a “train or test” slicing elegantly after splitting
I am learning numpy, pandas, and sklearn for machine learning now. My teacher gives me code like below, but I guess it is ugly. This code is for splitting the data into training set and testing set, ...
1
vote
1answer
25 views
Removing Loop from Numpy XOR
I have been playing around with numpy and matplotlib.
My little project was to create a scatter plot ranging from -1 to 1 on both X and Y, but where the shading is done with the XOR scheme.
The ...
3
votes
1answer
35 views
Using Numba works slower than not using it for my Python code
I thought this community is better place to ask my question so I ask here rather than at StackOverflow.
Recently, I learned that Numba can make Python function ...
1
vote
1answer
55 views
Python utility to clean noise from flat text files
I have created simple code in which it takes flat file (txt) and eliminate the noise and error and only return clean rows, i.e. return flat file with the data I am interested in. it works fine but ...
0
votes
0answers
27 views
3
votes
1answer
84 views
Selecting a quantity from a list
I want to implement a function take_upto_n(A, n)
such that for e.g.
...
-1
votes
1answer
58 views
Speed up calculation time of for loop in numpy [closed]
I am trying to calculate some values using numpy. Here is my code,
...
0
votes
1answer
60 views
Fill missing dates into array of np.datetime
Here is the problem:
Given an array of a non-continuous sequence of dates. Make it a
continuous sequence of dates, by filling in the missing dates.
...
2
votes
2answers
61 views
Finding distance between vectors of matrices
So here is the problem:
Given 2D numpy arrays 'a' and 'b' of sizes n×m and k×m
respectively and one natural number 'p'. You need to find the
distance(Euclidean) of the rows of the matrices 'a' and ...
6
votes
3answers
722 views
Marking duplicate entries in a numpy array as True
So the problem is
Find the duplicate entries (2nd occurrence onwards) in the given numpy
array and mark them as True. First time occurrences should be False.
And my solution is:
...
0
votes
0answers
41 views
Finding the Euclidean distance between the vectors of matrix a, and vector b
Here is the problem,
Given a 2D numpy array 'a' of sizes n×m and a 1D numpy array 'b' of
size m. You need to find the distance(Euclidean) of the 'b' vector
from the rows of the 'a' matrix. Fill the ...
4
votes
2answers
75 views
Creating nxm index list of array a
Here is the problem:
Given a numpy array 'a' that contains n elements, denote by b the set
of its unique values in ascending order, denote by m the size of
array b. You need to create a numpy array ...
2
votes
1answer
19 views
Reducing running time of creating integration field in flow field algorithm (python)
The integration field needs to get recalculated every time the starting or goal coordinates change. I wanted to use the flow field algorithm for a problem that includes bigger mazes with changing ...
5
votes
3answers
133 views
11
votes
1answer
162 views
From Hummingbirds to Ornithopters: Simulating the Aerodynamics of Flapping Wings
Ptera Software
A Flapping Wing Aerodynamics Simulator Written in Python
Motivation
About a year ago, I became fascinated by how animals fly. As an aerospace engineering student, it surprised me that ...
3
votes
1answer
49 views
Generating multiple new arrays using numpy
Say I have the following two different states:
state1 = [0, 1, 0, 1, 1]
state2 = [1, 1, 0, 0, 1]
And I want to generate n number of new states by only changing the ...
2
votes
1answer
419 views
Efficient NumPy sliding window function
Here is a function for creating sliding windows from a 1D NumPy array:
...
3
votes
0answers
31 views
Generating basic Fractals
Trying to generate fractals image with given IFS equations. I have two classes:
Shape - Gives co-ordinate to form a shape.
Ifs -...
1
vote
0answers
37 views
Reimplemented R function(s) is surprisingly slow
I reimplemented the functions https://rdrr.io/cran/fclust/man/RI.F.html, https://rdrr.io/cran/fclust/man/ARI.F.html and https://rdrr.io/cran/fclust/man/JACCARD.F.html of the R package https://rdrr.io/...
0
votes
1answer
51 views
Fast bruth force numpy array combination
I want to extract combinations of numpy arrays in that way:
...
2
votes
1answer
57 views
Performance issue in python- network creation based on the Euclidean distance with nested for loops is too slow
I want to create a network in which the links are formed based on a similarity metric defined as the Euclidean distance between the nodes. The distance is calculated using socio-demographic features ...
1
vote
1answer
94 views
decreasing solver speed
How can I decrease the time complexity and increase efficiency, without writing a new algorithm. My solution solves the majority of puzzles in a fast time, but for some difficult ones it can take over ...
2
votes
2answers
95 views
Downloading COVID data and uploading graphs
So this is a project I have been working on for the last few weeks. Just started learning Python. Started out with bash scripting and got the itch to learn more. Anyway code fetches covid-19 data from ...
0
votes
0answers
28 views
Reduce computing time of planning method (grid)
Has anyone an idea how to change the planning(self, sx, sy, gx, gy)-method to save computing time? I'm new to NumPy and don't know how to use it effectively yet, but I heard it could also be a good ...
0
votes
0answers
24 views
Optimized method of transfering numpy image arrays over localhost to web-tech UI for desktop UI
I have been doing testing to find the most efficient way to display numpy array images to a HTML, CSS, JS UI (specifically, with CEF Python).
I mainly used the method explained here to do the numpy ...
1
vote
1answer
40 views
IDF Function with a list of list
I wanted to build a Inverse Document Frequency function, because in my opinion was not easy to do with scikit and I wanted also to show how it works for educational reasons.
Also reading this question ...
5
votes
1answer
113 views
compare between two labels /objects -dominance rules
I have a function dominates() that seems to be the bottleneck of my algorithm (after profiling it). the function is as follows:
...
0
votes
1answer
49 views
Snake from the viewpoint of the snake
I wrote a little game of snake that where you can see the field in which the snake moves fixed and you can also see the "viewpoint" of the snake, which is basically calculating the positions ...
2
votes
1answer
42 views
Hardware driven data processing and ploting in need of better control flow
This is code for a measurement setup that receives a steady stream of UDP data, finds the trigger in one channel and operates on the data in the other channel to enhance the signal and remove noise, ...
1
vote
0answers
89 views
Multivariate Kernel Density Estimation for objects with missing values [closed]
I am trying to perform a certain numerical computation in Python with Numpy.
More specifically, I am doing a multivariate Kernel Density Estimation (KDE) in a Euclidean space of dimension ...
5
votes
0answers
67 views
Neural Network Written in Python is Extremely Slow
I coded a basic feedforward neural network with all pure python with the exception of numpy in order to better understand how neural networks work. It works, but the only problem is it is extremely ...
2
votes
0answers
31 views
Optimize binary classification model
I've created binary classification model from scratch, just to understand intuition behind that.
However when I compare my implementation to model from tensorflow/pytorch with the same parameters and ...
1
vote
0answers
27 views
Spectrograph using array-of-slice-references
I've written a working and complete proof of concept that shows a spectrograph in Matplotlib. I want to nail down this proof of concept before I continue with development, and I'm not thrilled with ...
1
vote
0answers
40 views
Resource reservation system
I'm using a function to determine if resources can be used again or not.
This is the numpy array I'm using.
...
1
vote
1answer
84 views
TicTacToe: If an error messages do not appear straight away
I am fairly new to Python and have tried to create a tic tac toe game that is completely automatic, where you can see if a player1 has an advantage if you let it ...
3
votes
2answers
147 views
Active Brownian Motion
I am attempting to write a Python code to simulate many particles in a confined box. These particles behave in such a way that they move in the box in straight lines with a slight angular noise (small ...
0
votes
0answers
82 views
Vectorized numpy co-occurrence matrix generation
Update
The implementation did not consider multiple occurrences of a same word, and self word occurrences.
For instance when stride=2 and the word at the position is ...
3
votes
1answer
102 views
Bancroft's method implementation
Background
I've written an algorithm to solve the three-dimensional Time Difference of Arrival (TDoA) multi-lateration problem. That is, given the coordinates of n ...
