Questions tagged [bioinformatics]
Bioinformatics is the use of software tools to analyse biological data.
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The Genetic Code
This question is part of a series solving the Rosalind challenges. For the previous question in this series, see Wascally wabbits. The repository with all my up-to-date solutions so far can be found ...
Mast♦
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Count the occurence of nucleobases in DNA string
Inspired by this meta question I decided to take a look at Rosalind. Their first challenge seemed easy enough:
An example of a length 21 DNA string (whose alphabet contains the symbols 'A', 'C', 'G', ...
Mast♦
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A small protein database
I am making a small database and these are the following files. The scripts are working. How can I improve my scripts? Are there any places where a problem could occur? I have yet to write tests for ...
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Python genetic sequence visualizer
I'm a beginner at python, and this is my first major project. Inspired by this reddit post, I wrote a program that accepts a DNA sequence (in a FASTA file format) and generates a graphical ...
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Calculating protein mass
This question is part of a series solving the Rosalind challenges. For the previous question in this series, see A sequence of mistakes. The repository with all my up-to-date solutions so far can be ...
Mast♦
- 13.1k
6
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GenBank to FASTA format using regular expressions without Biopython
This is a Biopython alternative with pretty straightforward code. How can I make this more concise?
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Genomic Range Query
Recently I worked on one of the Codility Training - Genomic Range Query (please refer to one of the evaluation report for the detail of this training).
The proper approach for this question is using ...
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Genetic Sequence Visualizer - Generating large images
Inspired by this reddit post, I have written a program that accepts a DNA sequence (in a FASTA file format) and generates a graphical representation.
HIV virus and Ebola virus
My program works like ...
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Counting nucleobases in a nucleotide
This question is part of a series solving the Rosalind challenges. For the previous question in this series, see Calculating protein mass ruby. The repository with all my up-to-date solutions so far ...
Mast♦
- 13.1k
3
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1
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Run an external program and extract a pattern match along with the result file
The script takes two input files of protein sequences and runs an external program (installed in linux/MacOS). The result provides a text output file example output.. Identity percentage is extracted ...
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A Java class for reading MaCH dosage files
A dosage file (used in computational genetics) is formatted like this:
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A Java class for reading MaCH dosage files v2.0
Version 2 of A Java class for reading MaCH dosage files
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A sequence of mistakes
This question is part of a series solving the Rosalind challenges. For the previous question in this series, see The Genetic Code. The repository with all my up-to-date solutions so far can be found ...
Mast♦
- 13.1k